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RE: a closer look at Hanson 2006
David Peters wrote-
Above I have listed many 'bumps' in your 'blend'. If your results produce
a hundredth of 34,000+, then your results produced 340 trees. Right?
That's still too many, and more than one, which is the number you are
competing against.
A comment regarding an impression I get from you, David- the number of most
parsimonious trees found by PAUP is not indicative of the accuracy of the
results. A large number of most parsimonious trees merely means the
analysis lacks the characters needed to place several taxa unambiguously.
It's possible to make a single MPT that's grossly inaccurate due to not
including conflicting characters, not ordering characters, ignoring
ontogeny, etc.
Mickey Mortimer