I think you are having issues with the sticky problem of aquaeousdrag. If I'm reading your right, in your vision of the situation, I sense a need to elevate the wings quickly, which would be difficult under deep water during poling...
1) As the head rises above the surface, the eyes, set far back on the
skull, break water, sense danger then things start moving. First,
everything flexes in panic. Flexion of the humerus brings the already
folded wing forward to the surface in a configuration the pterosaur
might also use to rest on dry ground...Momentarily freed from the water, the wings snap laterally and start flapping, but only employing the top half of
the beat cycle in order to avoid reentering the water.
Cheers,
--Mike Habib