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Phylogeny of basal birds 2/3
Then I took those with 10 or fewer codings away (*Hulsanpes*, *Noguerornis*,
*Halimornis*, *Lectavis*, *Yungavolucris*, *Avisaurus*, *Alexornis*) and did
everything once more. It's interesting that the number of MPTs increased
dramatically (404,762 before reweighting, 365,517 afterwards). Of course, so
did calculation times, from about 1 1/4 hours to about 10 hours.
Before reweighting:
Yay! PAUP* corrupted the treefile. TreeView says "Command 'Begin' used
incorrectly" and refuses to open.
After reweighting:
Strict:
+--allzero outgroup
|--*Caudipteryx* (forgot to mention: composite of all species)
|--this grouping was not supported without reweighting:
| |--Scansoriopterygidae
| |--*Archaeopteryx*
| |--basal Troodontidae
| `--+--*Microraptor* (forgot to mention: composite of both species)
| `--+--*Rahonavis*
| `--*Shenzhouraptor*
`--+--*Sapeornis* (always here when the above grouping is present)
`--+--*Yandangornis*
`--+--*Confuciusornis*
`--+--*Jibeinia*
`--+--+--*Yanornis*
| |--*Yixianornis*
| |--*Vorona*
| `--+--*Patagopteryx*
| `--all 8 other Euornithes
`--polytomy of Enantiornithes containing
`--+--*Sinornis*
`--+--*Concornis*
`--+--*Cuspirostrisornis*
|--*Soroavisaurus*
|--*Enantiornis*
|--*Neuquenornis*
`--*Eoalulavis*
Majority-rule:
+--allzero outgroup
`--+--*Caudipteryx*
`--+--+--*Archaeopteryx*
| `--+--Scansoriopterygidae
| `--+--basal Troodontidae
| `--+--*Microraptor*
| `--+--*Rahonavis*
| `--*Shenzhouraptor*
`--+--*Sapeornis*
`--+--*Yandangornis*
`--+--*Confuciusornis*
`--+--*Jibeinia*
`--+--Enantiornithes (see below)
`--+--*Yanornis*
`--+--*Vorona*
`--+--*Yixianornis*
`--+--*Patagopteryx* (always up here after
reweighting)
`--+--+--*Liaoningornis*
| |--*Apsaravis*
| `--*Songlingornis*
`--+--*Ambiortus*
|--*Gansus*
`--+--*Anas*
`--+--*Hesperornis*
`--*Ichthyornis*
Enantiornithes
|--*Iberomesornis*
`--+--*Otogornis*
`--polytomy containing
`--+--*Sinornis*
`--+--*Concornis*
`--+--*Enantiornis*
`--+--*Eoalulavis*
`--+--*Soroavisaurus*
`--+--*Cuspirostrisornis*
`--*Neuquenornis*
No Adams consensus -- I don't have enough RAM for that.